NAME

Bio::Network::Edge - holds the names of pairs of Nodes

SYNOPSIS

use Bio::Network;

# get a network, somehow, then:
my @edges = $graph->edges;
for my $edge (@edges) {
  for my $node ($edge->[0],$edge->[1]) {
    my @proteins = $node->proteins;
    for my $protein (@proteins) {
      print "Sequence is: ", $protein->seq, "\n";
    }
  }  
}

DESCRIPTION

This class contains the names of the Nodes in a bi-molecular interaction. An Edge object is extremely simple as most of the experimental or biological detail goes into the Interaction objects.

FEEDBACK

Mailing Lists

User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to one of the Bioperl mailing lists. Your participation is much appreciated.

bioperl-l@bioperl.org                  - General discussion
http://bioperl.org/wiki/Mailing_lists  - About the mailing lists

Support

Please direct usage questions or support issues to the mailing list:

bioperl-l@bioperl.org

rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible.

Reporting Bugs

Report bugs to the Bioperl bug tracking system to help us keep track the bugs and their resolution. Bug reports can be submitted via the web:

http://bugzilla.open-bio.org/

AUTHORS

Brian Osborne bosborne at alum.mit.edu Richard Adams richard.adams@ed.ac.uk

Maintained by Brian Osborne

new

Name       : new
Purpose    : Constructor for an Edge object
Usage      : my $edge = Bio::Network::Edge->new(-nodes => \@nodes);
Returns    : A new Bio::Network::Edge object 
Arguments  : -nodes => reference to an array containing a 
             pair of Nodes

nodes

Name       : nodes
Purpose    : Get the pair of nodes for an Edge
Usage      : my $count = $edge->nodes
                      or
             my @nodes = $edge->nodes
Returns    : Gets an array of 2 Nodes or a count of the number of
             Nodes
Arguments  :
Notes      : Getting a count of the number of Nodes in an edge will
             almost always return 2, but there is a formal possibility
             that a Node could interact with itself, returning 1

next_node

Name       :
Purpose    :
Usage      :
Returns    :
Arguments  :