NAME

bp_biogetseq - sequence retrieval using OBDA registry

DESCRIPTION

This script retrieves sequences from the source defined by users registry setup. The current alternatives are from a local indexed file, sql database or over the web.

USAGE

Usage: bp_biogetseq --dbname embl --format embl
                 --namespace acc id [ ids... ]
       * dbname defaults to embl
       * format defaults to embl
       * namespace defaults to 'acc' ['id', 'acc', 'version']
       * unnamed arguments are ids in the given namespace