/ 
digitagCT-1.01
River stage zero No dependents
/ CracTools::DigitagCT::Analyzer::Annotation

METHODS

new

Arg [gff_file]    : String - GFF file to perform annotation with
Arg [est_file]    : String (Optional) - GFF file with EST to find annotation if none
                    have been found in the 

Example     : my $annotation = CracTools::GFF::Annotation->new(gff_file => $gff);
Description : Create a new CracTools::ChimCT::Analyzer::Annotation object
ReturnType  : CracTools::ChimCT::Analyzer::Annotation
Exceptions  : none

getCandidateCodingPriority

Arg [1] : String - pos_start
Arg [2] : String - pos_end
Arg [3] : hash - candidate

Description : Method used to give a priority to a candidate in CracTools;:Annotator
              The best priority is 0. A priority of -1 means that this candidate
              should be avoided.
ReturnType  : ($priority,$type)

getCandidateNonCodingPriority

Arg [1] : String - pos_start
Arg [2] : String - pos_end
Arg [3] : hash - candidate

Description : Method used to give a priority to a candidate in CracTools;:Annotator
              The best priority is 0. A priority of -1 means that this candidate
              should be avoided.
ReturnType  : ($priority,$type)