NAME
Data::Type::Collection::Bio - datatypes for biology
SYNOPSIS
print "found dna" if shift and is BIO::DNA;
valid 'AUGGGAAAU', BIO::RNA;
valid 'ATGCAAAT', BIO::DNA;
try
{
typ ENUM( qw(DNA RNA) ), \( my $a, my $b );
print "a is typ'ed" if istyp( $a );
$a = 'DNA'; # $alias only accepts 'DNA' or 'RNA'
$a = 'RNA';
$a = 'xNA'; # throws exception
untyp( $alias );
}
catch Data::Type::Exception with
{
printf "Expected '%s' %s at %s line %s\n",
$e->value,
$e->type->info,
$e->file,
$e->line;
};
valid 'AUGGGAAAU', BIO::RNA;
valid 'ATGCAAAT', BIO::DNA;DESCRIPTION
Everything that is related to biological matters.
[Note] Also have a glimpse on 'Chem' collection.
TYPES
BIO::CODON (since 0.01.03)
DNA/RNA triplet
Filters
strip \s
Usage
triplet of DNA or RNA
BIO::DNA (since 0.01.03)
dna fragment
Filters
strip \s
Usage
sequence of [ATGC]
BIO::RNA (since 0.01.03)
RNA fragment
Filters
strip \s
Usage
sequence of [ATUC]
INTERFACE
CONTACT
Sourceforge http://sf.net/projects/datatype is hosting a project dedicated to this module. And I enjoy receiving your comments/suggestion/reports also via http://rt.cpan.org or http://testers.cpan.org.
AUTHOR
Murat Uenalan, <muenalan@cpan.org>